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The availability of high-quality RNA-sequencing and genotyping data of post-mortem brain collections from consortia such as CommonMind Consortium (CMC) and the Accelerating Medicines Partnership for Alzheimer's Disease (AMP-AD) Consortium enable the generation of a large-scale brain cis-eQTL meta-analysis. Here we generate cerebral cortical eQTL from 1433 samples available from four cohorts (identifying >4.1 million significant eQTL for >18,000 genes), as well as cerebellar eQTL from 261 samples (identifying 874,836 significant eQTL for >10,000 genes). We find substantially improved power in the meta-analysis over individual cohort analyses, particularly in comparison to the Genotype-Tissue Expression (GTEx) Project eQTL. Additionally, we observed differences in eQTL patterns between cerebral and cerebellar brain regions. We provide these brain eQTL as a resource for use by the research community. As a proof of principle for their utility, we apply a colocalization analysis to identify genes underlying the GWAS association peaks for schizophrenia and identify a potentially novel gene colocalization with lncRNA RP11-677M14.2 (posterior probability of colocalization 0.975).

Original publication

DOI

10.1038/s41597-020-00642-8

Type

Journal article

Journal

Scientific data

Publication Date

12/10/2020

Volume

7

Addresses

Sage Bionetworks, Seattle, WA, 98121, USA. solly.sieberts@sagebase.org.

Keywords

CommonMind Consortium (CMC), The AMP-AD Consortium, Cerebellar Cortex, Cerebral Cortex, Humans, Gene Expression Profiling, Schizophrenia, Quantitative Trait Loci, Meta-Analysis as Topic, Genome-Wide Association Study, RNA, Long Noncoding, Datasets as Topic