{
    "items": [
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1016/j.ebiom.2025.105890\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2283800\" title=\"Clade I mpox vaccination: strategies for deployment and evaluation\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Clade I mpox vaccination: strategies for deployment and evaluation</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Pley C. et al, (2025), eBioMedicine, 119, 105890 - 105890</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1186/s12859-025-06189-y\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2281869\" title=\"HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Golubchik T. et al, (2025), BMC Bioinformatics, 26</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1016/j.jtbi.2025.112177\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2130036\" title=\"Estimating the contribution of age-structure to the COVID-19 epidemic in England\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Estimating the contribution of age-structure to the COVID-19 epidemic in England</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hinch R. et al, (2025), Journal of Theoretical Biology, 611, 112177 - 112177</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1093/ije/dyaf126\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2283801\" title=\"Age and gender profiles of HIV infection burden and viraemia: novel metrics for HIV epidemic control in African populations with high antiretroviral therapy coverage\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Age and gender profiles of HIV infection burden and viraemia: novel metrics for HIV epidemic control in African populations with high antiretroviral therapy coverage</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Brizzi A. et al, (2025), International Journal of Epidemiology, 54</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2025.05.12.653435\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2128306\" title=\"Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Attenuation of HIV severity by slightly deleterious mutations can explain the long-term trajectory of virulence evolution</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Longley H. et al, (2025)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2025.05.02.25326873\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2123658\" title=\"The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hall M. et al, (2025)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1002/jia2.26463\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2122937\" title=\"Incorporating acute HIV infection screening, same\u2010day diagnosis and antiretroviral treatment into routine services for key populations at sexual health clinics in Indonesia: a baseline analysis of the INTERACT prospective study\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Incorporating acute HIV infection screening, same\u2010day diagnosis and antiretroviral treatment into routine services for key populations at sexual health clinics in Indonesia: a baseline analysis of the INTERACT prospective study</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Irwanto I. et al, (2025), Journal of the International AIDS Society, 28</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41586-024-08564-w\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2091043\" title=\"Artificial intelligence for modelling infectious disease epidemics\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Artificial intelligence for modelling infectious disease epidemics</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Kraemer MUG. et al, (2025), Nature, 638, 623 - 635</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1093/ve/veaf052\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2259097\" title=\"Estimates of HIV-1 within-host recombination rates across the whole genome\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Estimates of HIV-1 within-host recombination rates across the whole genome</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Longley H. et al, (2025), Virus Evolution, 11</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1093/ve/veaf057\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2347675\" title=\"The genetic architecture of HIV-1 virulence\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">The genetic architecture of HIV-1 virulence</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Blanquart F. et al, (2025), Virus Evolution, 11</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1371/journal.pcbi.1012618\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2063879\" title=\"Learning patterns of HIV-1 resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Learning patterns of HIV-1 resistance to broadly neutralizing antibodies with reduced subtype bias using multi-task learning</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Igiraneza AB. et al, (2024), PLOS Computational Biology, 20, e1012618 - e1012618</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2024.10.24.24315886\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2054767\" title=\"Public reporting guidelines for outbreak data: Enabling accountability for effective outbreak response by developing standards for transparency and uniformity\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Public reporting guidelines for outbreak data: Enabling accountability for effective outbreak response by developing standards for transparency and uniformity</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Gr\u00e9goire V. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2024.10.21.24314869\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2054140\" title=\"Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Martin MA. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.21203/rs.3.rs-4969814/v1\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2094811\" title=\"Phylodynamic Structure in the Botswana HIV Epidemic\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Phylodynamic Structure in the Botswana HIV Epidemic</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Kotokwe K. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1093/ve/veae065\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2026743\" title=\"Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Kim S. et al, (2024), Virus Evolution, 10</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n"
    ],
    "more": "\n\n    \n        <a href=\"https://www.ndm.ox.ac.uk/publications/search?format=json&amp;random=e2d84d65-43f3-4530-b52b-79e72851419b&amp;b_start:int=30&amp;author=whgu0699\" title=\"Load more\" class=\"btn load-more-button\">\n            Load More\n        </a>\n    \n\n\n",
    "msg": ""
}