{
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        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2024.08.30.24312845\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2026742\" title=\"Unpacking sources of transmission in HIV prevention trials with deep-sequence pathogen data \u2013 BCPP/ Ya Tsie study\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Unpacking sources of transmission in HIV prevention trials with deep-sequence pathogen data \u2013 BCPP/ Ya Tsie study</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Magosi LE. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41598-024-68154-8\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2023549\" title=\"Quantification of the time-varying epidemic growth rate and of the delays between symptom onset and presenting to healthcare for the mpox epidemic in the UK in 2022\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Quantification of the time-varying epidemic growth rate and of the delays between symptom onset and presenting to healthcare for the mpox epidemic in the UK in 2022</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hinch R. et al, (2024), Scientific Reports, 14</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1126/science.adm8103\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2014802\" title=\"Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Kendall M. et al, (2024), Science, 385</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2024.08.01.606208\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2021157\" title=\"Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Ferretti L. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41467-024-50487-7\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2017687\" title=\"Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Wang Z. et al, (2024), Nature Communications, 15</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41598-024-63216-3\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/2008774\" title=\"Associations between HIV stigma and health-related quality-of-life among people living with HIV: cross-sectional analysis of data from HPTN 071 (PopART)\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Associations between HIV stigma and health-related quality-of-life among people living with HIV: cross-sectional analysis of data from HPTN 071 (PopART)</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hall E. et al, (2024), Scientific Reports, 14</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2024.04.21.24306145\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1995635\" title=\"Age and gender profiles of HIV infection burden and viraemia: novel metrics for HIV epidemic control in African populations with high antiretroviral therapy coverage\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Age and gender profiles of HIV infection burden and viraemia: novel metrics for HIV epidemic control in African populations with high antiretroviral therapy coverage</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Brizzi A. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2024.03.14.24303990\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1953457\" title=\"Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Kim S. et al, (2024)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41586-024-07029-4\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1598137\" title=\"Prevalence of persistent SARS-CoV-2 in a large community surveillance study\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Prevalence of persistent SARS-CoV-2 in a large community surveillance study</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Ghafari M. et al, (2024), Nature, 626, 1094 - 1101</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41586-023-06952-2\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1586256\" title=\"Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Digital measurement of SARS-CoV-2 transmission risk from 7 million contacts</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Ferretti L. et al, (2024), Nature, 626, 145 - 150</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1016/s2666-5247(23)00220-3\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1582466\" title=\"Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hall M. et al, (2024), The Lancet Microbe, 5, e62 - e71</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1038/s41564-023-01530-8\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1577935\" title=\"Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Monod M. et al, (2023), Nature Microbiology, 9, 35 - 54</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.21203/rs.3.rs-2298855/v2\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1577941\" title=\"Quantification of the time-varying epidemic growth rate and of the delays between symptom onset and presenting to healthcare for the mpox epidemic in the UK in 2022\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Quantification of the time-varying epidemic growth rate and of the delays between symptom onset and presenting to healthcare for the mpox epidemic in the UK in 2022</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Panovska-Griffiths J. et al, (2023)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1098/rspb.2023.1284\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1546066\" title=\"Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=1\" title=\"Journal article\">\n                            <span class=\"badge bg-primary\">Journal article</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Lythgoe KA. et al, (2023), Proceedings of the Royal Society B: Biological Sciences, 290</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n",
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"float-end\">\n                        <div class=\"altmetric-embed\" data-badge-type=\"donut\" data-doi=\"10.1101/2023.10.19.563197\" data-link-target=\"_blank\"></div>\n                    </div>\n                \n            \n                <h2>\n                    <a href=\"publication_modal/1743101\" title=\"Directional predictions of HIV transmission with optimised genomics in cohorts of serodiscordant couples\" class=\"pat-plone-modal\" data-pat-plone-modal='{\"buttons\":\".formControls a\"}' itemprop=\"name\">Directional predictions of HIV transmission with optimised genomics in cohorts of serodiscordant couples</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        <a href=\"https://www.ndm.ox.ac.uk/publications/search?type=7\" title=\"Preprint\">\n                            <span class=\"badge bg-primary\">Preprint</span>\n                        </a>\n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Zhao L. et al, (2023)</p>\n                \n                        \n                \n                    <p>\n                        \n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n"
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