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The complete genome of goose picornavirus 1 (GPV-1) strain goose/NLSZK2/HUN/2013 (MF358731) was determined by RT-PCR and next-generation sequencing from a cloacal sample of a migratory waterfowl, greater white-fronted goose (Anser albifrons) in Hungary. The genome of GPV-1 shows an L-3-3-4 organization pattern with a 5'-terminal origin of replication (ORI) region, a type-IV IRES, and an Hbox/NC-type 2A protein. This virus showed the highest overall sequence identity to the members of the genus Kobuvirus, although the phylogenetic position of GPV-1 is different in the analyzed P1, 2C and 3CD phylogenetic trees, which further increases the diversity of known avian picornaviruses.

Original publication

DOI

10.1007/s00705-017-3696-3

Type

Journal article

Journal

Arch Virol

Publication Date

04/2018

Volume

163

Pages

1087 - 1090

Keywords

Amino Acid Sequence, Animal Migration, Animals, Base Sequence, Bird Diseases, Geese, Genome, Viral, Genomics, High-Throughput Nucleotide Sequencing, Hungary, Phylogeny, Picornaviridae, Picornaviridae Infections, Sequence Alignment, Sequence Homology, Amino Acid, Viral Proteins