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Publications

Inference of host-pathogen interaction matrices from genome-wide polymorphism data.

Märkle H. et al, (2024), Molecular biology and evolution

Sustained aviraemia despite anti-retroviral therapy non-adherence in male children following in utero hiv transmission

Bengu N. et al, (2024), Nature Medicine

Prevalence of resistance-associated viral variants to the HIV-specific broadly neutralising antibody 10-1074 in a UK bNAb-naïve population

Zacharopoulou P. et al, (2024), Frontiers in Immunology, 15

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus

Lin G-L. et al, (2024), Nature Communications, 15

HepFREEPak: protocol for a multi-centre, prospective observational study examining efficacy and impact of current therapies for the treatment of hepatitis C in Pakistan and reporting resistance to antiviral drugs: study protocol

Arif A. et al, (2023), BMC Public Health, 23

Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes.

Christensen KT. et al, (2023), Viruses, 15

An enrichment protocol and analysis pipeline for long read sequencing of the hepatitis B virus transcriptome

Ng E. et al, (2023), Journal of General Virology, 104

Defining the key intrahepatic gene networks in HCV infection driven by sex

Marchi E. et al, (2023), Gut, 72, 984 - 994

The impact of pre-existing cross-reactive immunity on SARS-CoV-2 infection and vaccine responses

Murray SM. et al, (2023), Nature Reviews Immunology, 23, 304 - 316

Evolution of long-term vaccine-induced and hybrid immunity in healthcare workers after different COVID-19 vaccine regimens

Moore SC. et al, (2023), Med, 4, 191 - 215.e9

Genetic variation inTERTmodifies the risk of hepatocellular carcinoma in alcohol-related cirrhosis: results from a genome-wide case-control study

Buch S. et al, (2023), Gut, 72, 381 - 391

A systematic review of Hepatitis B virus (HBV) prevalence and genotypes in Kenya: Data to inform clinical care and health policy

Downs LO. et al, (2023), PLOS Global Public Health, 3, e0001165 - e0001165

Utility of a buccal swab point-of-care test for the IFNL4 genotype in the era of direct acting antivirals for hepatitis C virus

Sy A. et al, (2023), PLOS ONE, 18, e0280551 - e0280551

Efficacy of ultra-short, response-guided sofosbuvir and daclatasvir therapy for hepatitis C in a single-arm mechanistic pilot study

Flower B. et al, (2023), eLife, 12

A calculated risk: Evaluating HIV resistance to the broadly neutralising antibodies10-1074 and 3BNC117

Zacharopoulou P. et al, (2022), Current Opinion in HIV and AIDS, 17, 352 - 358

Constructing custom-made radiotranscriptomic signatures of vascular inflammation from routine CT angiograms: a prospective outcomes validation study in COVID-19

Kotanidis CP. et al, (2022), The Lancet Digital Health, 4, e705 - e716

The rs429358 Locus in Apolipoprotein E Is Associated With Hepatocellular Carcinoma in Patients With Cirrhosis

Innes H. et al, (2022), Hepatology Communications, 6, 1213 - 1226

Durability of ChAdOx1 nCoV-19 vaccination in people living with HIV

Ogbe A. et al, (2022), JCI Insight, 7

Divergent trajectories of antiviral memory after SARS-CoV-2 infection

Tomic A. et al, (2022), Nature Communications, 13

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

Ahern DJ. et al, (2022), Cell, 185, 916 - 938.e58

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