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Publications

Modelling the impact of rapid tests, tracing and distancing in lower-income countries suggest optimal policies varies with rural-urban settings

Jiang X. et al, (2021)

Modeling the effect of exposure notification and non-pharmaceutical interventions on COVID-19 transmission in Washington state.

Abueg M. et al, (2021), NPJ Digit Med, 4

SARS-CoV-2 within-host diversity and transmission

Lythgoe KA. et al, (2021), Science, eabg0821 - eabg0821

Time to evaluate COVID-19 contact-tracing apps.

Colizza V. et al, (2021), Nat Med, 27, 361 - 362

Epidemiological changes on the Isle of Wight after the launch of the NHS Test and Trace programme: a preliminary analysis.

Kendall M. et al, (2020), The Lancet. Digital health, 2, e658 - e666

Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load.

Fogel JM. et al, (2020), The Journal of antimicrobial chemotherapy, 75, 3510 - 3516

Systematic selection between age and household structure for models aimed at emerging epidemic predictions

Pellis L. et al, (2020), Nature Communications, 11

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

Azarian T. et al, (2020), PLOS Biology, 18, e3000878 - e3000878

Bimodal distribution and set point HBV DNA viral loads in chronic infection: retrospective analysis of cohorts from the UK and South Africa

Downs LO. et al, (2020), Wellcome Open Research, 5, 113 - 113

ISARIC Clinical Data Report 4 October 2020

Pritchard M. et al, (2020)

A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income Settings

Bonsall D. et al, (2020), Journal of Clinical Microbiology, 58

COVID-19 incidence and R decreased on the Isle of Wight after the launch of the Test, Trace, Isolate programme

Kendall M. et al, (2020)

Ethics of instantaneous contact tracing using mobile phone apps in the control of the COVID-19 pandemic.

Parker MJ. et al, (2020), Journal of medical ethics, 46, 427 - 431

High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment.

El Bouzidi K. et al, (2020), The Journal of antimicrobial chemotherapy, 75, 1575 - 1579

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing

Ferretti L. et al, (2020), Science, 368, eabb6936 - eabb6936

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

Lehtinen S. et al, (2020), Science Advances, 6, eaaz6137 - eaaz6137

Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda

Bbosa N. et al, (2020), Viruses, 12, 331 - 331

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing

Ferretti L. et al, (2020)

Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda

Ratmann O. et al, (2020), The Lancet HIV, 7, e173 - e183

Evaluation of phylogenetic methods for inferring the direction of HIV transmission: HPTN 052.

Zhang Y. et al, (2020), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

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