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Publications

TAPS: The Development of a Direct and Base-Resolution Sequencing Method for DNA Methylation

Liu Y. and Song C-X., (2022), ACS Chemical Biology

Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution

Liu Y. et al, (2021), Nature Communications, 12

Cell-free DNA TAPS provides multimodal information for early cancer detection.

Siejka-Zielińska P. et al, (2021), Science advances, 7

Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection.

Cheng J. et al, (2021), Nucleic acids research, 49

Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS

Liu Y. et al, (2020), Genome Biology, 21

Mapping the epigenetic modifications of DNA and RNA.

Zhao L-Y. et al, (2020), Protein & cell, 11, 792 - 808

Homoharringtonine exhibits potent anti-tumor effect and modulates DNA epigenome in acute myeloid leukemia by targeting SP1/TET1/5hmC.

Li C. et al, (2020), Haematologica, 105, 148 - 160

Systematic allelic analysis defines the interplay of key pathways in X chromosome inactivation

Nesterova TB. et al, (2019), Nature Communications, 10

5-Carboxylcytosine is resistant towards phosphodiesterase I digestion: implications for epigenetic modification quantification by mass spectrometry

Yuan F. et al, (2019), RSC ADVANCES, 9, 29010 - 29014

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.

Liu Y. et al, (2019), Nature biotechnology, 37, 424 - 429

Bisulfite-free and base-resolution analysis of 5-methylcytidine and 5-hydroxymethylcytidine in RNA with peroxotungstate

Yuan F. et al, (2019), Chemical Communications, 55, 2328 - 2331

Glucose and glutamine availability regulate HepG2 transcriptional responses to low oxygen

Lai AG. et al, (2018), Wellcome Open Research, 3, 126 - 126

Simultaneously Monitoring Immune Response and Microbial Infections during Pregnancy through Plasma cfRNA Sequencing

Pan W. et al, (2017), Clinical Chemistry, 63, 1695 - 1704

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

Song C-X. et al, (2017), Cell Research, 27, 1231 - 1242

Quantitation and mapping of the epigenetic marker 5-hydroxymethylcytosine

Qing Y. et al, (2017), BioEssays, 39, 1700010 - 1700010

FOXA1 potentiates lineage-specific enhancer activation through modulating TET1 expression and function

Yang YA. et al, (2016), Nucleic Acids Research, 44, 8153 - 8164

Simultaneous single-molecule epigenetic imaging of DNA methylation and hydroxymethylation

Song C-X. et al, (2016), Proceedings of the National Academy of Sciences, 113, 4338 - 4343

Identification of MLL-fusion/MYC⊣miR-26⊣TET1 signaling circuit in MLL-rearranged leukemia

Huang H. et al, (2016), Cancer Letters, 372, 157 - 165

Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics

Lu X. et al, (2015), Cell Research, 25, 386 - 389

Detection of mismatched 5-hydroxymethyluracil in DNA by selective chemical labeling

Yu M. et al, (2015), Methods, 72, 16 - 20

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