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Publications

Common loss of far-red light photoacclimation in cyanobacteria from hot and cold deserts: a case study in the Chroococcidiopsidales.

Antonaru LA. et al, (2023), ISME communications, 3

Laboratory diagnosed microbial infection in English UK Biobank participants in comparison to the general population.

Hilton B. et al, (2023), Scientific reports, 13

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Hunt M. et al, (2022), Genome Biology, 23

Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing ofM. tuberculosis

(2022), European Respiratory Journal, 60, 2200239 - 2200239

A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics

(2022), PLOS Biology, 20, e3001721 - e3001721

Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms

(2022), PLOS Biology, 20, e3001755 - e3001755

A first update on mapping the human genetic architecture of COVID-19.

COVID-19 Host Genetics Initiative None., (2022), Nature, 608, E1 - E10

Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections.

Giulieri SG. et al, (2022), eLife, 11

A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates

Fowler PW. et al, (2022), eLife, 11

Targeted control of pneumolysin production by a mobile genetic element in Streptococcus pneumoniae

Stevens EJ. et al, (2022), Microbial Genomics, 8

Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape.

Muloi DM. et al, (2022), Nature microbiology, 7, 581 - 589

Evolutionary Processes Driving the Rise and Fall of Staphylococcus aureus ST239, a Dominant Hybrid Pathogen

Gill JL. et al, (2021), mBio, 12

Mapping the human genetic architecture of COVID-19

Niemi MEK. et al, (2021), Nature, 600, 472 - 477

Using host genetics to infer the global spread and evolutionary history of HCV subtype 3a

Lin S-K. et al, (2021), Virus Evolution, 7

Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study

Young BC. et al, (2021), Microbial Genomics, 7

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis

Earle SG. et al, (2021), PLOS Pathogens, 17, e1009992 - e1009992

Machine learning to predict the source of campylobacteriosis using whole genome data.

Arning N. et al, (2021), PLoS genetics, 17

Genome-wide association studies of global Mycobacterium tuberculosis resistance to thirteen antimicrobials in 10,228 genomes

Earle SG. and Wilson DJ., (2021)

Genomic network analysis of environmental and livestock F-type plasmid populations

Matlock W. et al, (2021), The ISME Journal, 15, 2322 - 2335

Genetic mechanisms of critical illness in COVID-19

Pairo-Castineira E. et al, (2021), Nature, 591, 92 - 98

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