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Deep clustering of bacterial tree images.

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Hayati M. et al, (2022), Philos Trans R Soc Lond B Biol Sci, 377

Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic

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Attwood SW. et al, (2022), Nature Reviews Genetics, 23, 547 - 562

Europe-wide expansion and eradication of multidrug-resistant Neisseria gonorrhoeae lineages: a genomic surveillance study.

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Sánchez-Busó L. et al, (2022), Lancet Microbe, 3, e452 - e463

Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence

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Kraemer MUG. et al, (2021), Science, 373, 889 - 895

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

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du Plessis L. et al, (2021), Science, 371, 708 - 712

Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae.

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David S. et al, (2020), Proceedings of the National Academy of Sciences of the United States of America, 117, 25043 - 25054

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread

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David S. et al, (2019), Nature Microbiology, 4, 1919 - 1929

PANINI: Pangenome Neighbour Identification for Bacterial Populations

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Abudahab K. et al, (2019), Microbial Genomics, 5

Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

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Rhodes J. et al, (2018), Emerging Microbes & Infections, 7, 1 - 2

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

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Rhodes J. et al, (2018), Emerging Microbes & Infections, 7, 1 - 12

The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa

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Park SE. et al, (2018), Nature Communications, 9

Gene exchange drives the ecological success of a multi-host bacterial pathogen

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Richardson EJ. et al, (2018), Nature Ecology & Evolution, 2, 1468 - 1478

Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey

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Harris SR. et al, (2018), The Lancet Infectious Diseases, 18, 758 - 768

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