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Publications

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

Lipworth S. et al, (2020), Microbial Genomics

Case Report: Disseminated, rifampicin resistant Mycobacterium bovis (BCG) infection in an immunocompromised child

Drysdale SB. et al, (2020), Wellcome Open Research, 5, 242 - 242

Awareness of Appropriate Antibiotic Use in Primary Care for Influenza-Like Illness: Evidence of Improvement from UK Population-Based Surveys

Pouwels KB. et al, (2020), Antibiotics, 9, 690 - 690

SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus

Andersson MI. et al, (2020), Wellcome Open Research, 5, 181 - 181

Risk Factors Associated with Carbapenemase-Producing Enterobacterales (CPE) Positivity in the Hospital Wastewater Environment

Park SC. et al, (2020), Applied and Environmental Microbiology, 86

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

Eyre DW. et al, (2020), eLife, 9

SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus

Andersson MI. et al, (2020), Wellcome Open Research, 5, 181 - 181

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

Constantinides B. et al, (2020), Microbial Genomics, 6

NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline.

Xu Y. et al, (2020), Nucleic acids research, 48, W366 - W371

Evaluation of methods for detecting human reads in microbial sequencing datasets

Bush SJ. et al, (2020), Microbial Genomics

Dynamic linkage of COVID-19 test results between Public Health England’s Second Generation Surveillance System and UK Biobank

Armstrong J. et al, (2020), Microbial Genomics

Antibody testing for COVID-19: A report from the National COVID Scientific Advisory Panel

Adams ER. et al, (2020), Wellcome Open Research, 5, 139 - 139

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies

Lipworth S. et al, (2020)

Multi-omic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

Constantinides B. et al, (2020)

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Bush SJ. et al, (2020), GigaScience, 9

Characterizing Antimicrobial Resistant Escherichia coli and Associated Risk Factors in a Cross-Sectional Study of Pig Farms in Great Britain.

AbuOun M. et al, (2020), Frontiers in Microbiology, 11

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

Street TL. et al, (2019), Journal of Clinical Microbiology

Relationship between microbiology of throat swab and clinical course among primary care patients with acute cough: a prospective cohort study

Ordóñez-Mena JM. et al, (2019), Family Practice

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

Hunt M. et al, (2019), Wellcome Open Research, 4, 191 - 191

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

van Aartsen JJ. et al, (2019), BMC Microbiology, 19

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