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Publications

The utility of Escherichia coli as a contamination indicator for rural drinking water: Evidence from whole genome sequencing

Nowicki S. et al, (2021), PLOS ONE, 16, e0245910 - e0245910

Whole genome sequences of multi-drug resistant Escherichia coli isolated in a Pastoralist Community of Western Uganda: Phylogenomic changes, virulence and resistant genes.

Iramiot JS. et al, (2020), PloS one, 15

Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants.

Musimbi ZD. et al, (2019), Scientific reports, 9

A peek into Western Indian Ocean microbial richness: a pilot for a coral microbiome study

Wambua S. et al, (2019)

Repeated clinical malaria episodes are associated with modification of the immune system in children.

Bediako Y. et al, (2019), BMC medicine, 17

Comparative analysis of the vaginal microbiome of pregnant women with either Trichomonas vaginalis or Chlamydia trachomatis.

Masha SC. et al, (2019), PloS one, 14

Infestation mechanisms of two woodborer species in the mangrove Sonneratia alba J. Smith in Kenya and co-occurring endophytic fungi.

Jenoh EM. et al, (2019), PloS one, 14

Sequence analysis of cell-free DNA derived from cultured human bone osteosarcoma (143B) cells

Bronkhorst AJ. et al, (2018), Tumor Biology, 40, 101042831880119 - 101042831880119

The eBioKit, a stand-alone educational platform for bioinformatics

Hernández-de-Diego R. et al, (2017), PLOS Computational Biology, 13, e1005616 - e1005616

Geographic-genetic analysis of Plasmodium falciparum parasite populations from surveys of primary school children in Western Kenya

Omedo I. et al, (2017), Wellcome Open Research, 2, 29 - 29

Geographic-genetic analysis of Plasmodium falciparum parasite populations from surveys of primary school children in Western Kenya

Omedo I. et al, (2017), Wellcome Open Research, 2, 29 - 29

Micro-epidemiological structuring of Plasmodium falciparum parasite populations in regions with varying transmission intensities in Africa.

Omedo I. et al, (2017), Wellcome Open Research, 2, 10 - 10

Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies

Gimode D. et al, (2016), PLOS ONE, 11, e0159437 - e0159437

Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X

Bishop RP. et al, (2015), Virus Genes, 50, 303 - 309

eBioKit bioinformatics workshops in Dar es Salaam, Tanzania

De Villiers EP. and Bongcam-Rudloff E., (2014), EMBnet.journal, 20, 755 - 755

Camel Streptococcus agalactiae populations are associated with specific disease complexes and acquired the tetracycline resistance gene tetM via a Tn916-like element

Fischer A. et al, (2013), Veterinary Research, 44

Genome Sequence of Streptococcus agalactiae Strain 09mas018883, Isolated from a Swedish Cow

Zubair S. et al, (2013), Genome Announcements, 1

Genome Sequences of Two Pathogenic Streptococcus agalactiae Isolates from the One-Humped Camel Camelus dromedarius

Zubair S. et al, (2013), Genome Announcements, 1

Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava

Ferguson ME. et al, (2012), Theoretical and Applied Genetics, 124, 685 - 695

ISCB Africa ASBCB Conference on Bioinformatics and eBioKit Workshop

De Villiers E. et al, (2011), EMBnet.journal, 17, 7 - 7

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