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Publications

Absolute quantitative and base-resolution sequencing reveals comprehensive landscape of pseudouridine across the human transcriptome

Xu H. et al, (2024), Nature Methods

Characterisation of HBV and co-infection with HDV and HIV through spatial transcriptomics

Cross A. et al, (2024), eGastroenterology, 2, e100067 - e100067

An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection

Mukherji A. et al, (2024), Nature Communications, 15

Oxygen-dependent histone lysine demethylase 4 restricts hepatitis B virus replication

Harris JM. et al, (2024), Journal of Biological Chemistry, 300, 105724 - 105724

CTCF regulates hepatitis B virus cccDNA chromatin topology.

Dobrica MO. et al, (2024), The Journal of general virology, 105

Hypoxia inducible factors inhibit respiratory syncytial virus infection by modulation of nucleolin expression.

Zhuang X. et al, (2024), iScience, 27

The N6-methyladenosine demethylase ALKBH5 regulates the hypoxic HBV transcriptome.

Tsukuda S. et al, (2024), PLoS pathogens, 20

The N6-methyladenosine demethylase ALKBH5 regulates the hypoxic HBV transcriptome.

Tsukuda S. et al, (2023), bioRxiv

ASPP2 binds to hepatitis C virus NS5A protein via an SH3 domain/PxxP motif-mediated interaction and potentiates infection

Smirnov A. et al, (2023), Journal of General Virology, 104

Inhibition of salt inducible kinases reduces rhythmic HIV-1 replication and reactivation from latency.

Borrmann H. et al, (2023), The Journal of general virology, 104

Molecular components of the circadian clock regulate HIV-1 replication

Borrmann H. et al, (2023), iScience, 26

HLA-E–restricted SARS-CoV-2–specific T cells from convalescent COVID-19 patients suppress virus replication despite HLA class Ia down-regulation

Yang H. et al, (2023), Science Immunology, 8

An enrichment protocol and analysis pipeline for long read sequencing of the hepatitis B virus transcriptome

Ng E. et al, (2023), Journal of General Virology, 104

An ACAT inhibitor suppresses SARS-CoV-2 replication and boosts antiviral T cell activity.

Wing PAC. et al, (2023), PLoS pathogens, 19

Sleep and circadian rhythm disruption alters the lung transcriptome to predispose to viral infection.

Taylor L. et al, (2023), iScience, 26

Hypoxia inducible factors regulate infectious SARS-CoV-2, epithelial damage and respiratory symptoms in a hamster COVID-19 model

Wing PAC. et al, (2022), PLOS Pathogens, 18, e1010807 - e1010807

Time-of-Day Variation in SARS-CoV-2 RNA Levels during the Second Wave of COVID-19

Zhuang X. et al, (2022), Viruses, 14, 1728 - 1728

Are the Patterns of Cytomegalovirus Viral Load Seen After Solid Organ Transplantation Affected by Circadian Rhythm?

Rafferty H. et al, (2022), The Journal of infectious diseases, 226, 357 - 365

Reply to: ‘Active HBV replication in hypoxic pericentral zone 3 is upregulated by multiple host factors including HIF-1α’

Harris JM. et al, (2022), Journal of Hepatology, 77, 267 - 268

Inflammatory Gene Expression Associates with Hepatitis B Virus cccDNA- but Not Integrant-Derived Transcripts in HBeAg Negative Disease

Magri A. et al, (2022), Viruses, 14, 1070 - 1070

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