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Publications

Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells.

Parker R. et al, (2021), Cell reports, 35

Incoming HIV virion-derived Gag Spacer Peptide 2 (p1) is a target of effective CD8+ T cell antiviral responses.

Yang H. et al, (2021), Cell reports, 35

Integral Use of Immunopeptidomics and Immunoinformatics for the Characterization of Antigen Presentation and Rational Identification of BoLA-DR-Presented Peptides and Epitopes.

Fisch A. et al, (2021), Journal of immunology (Baltimore, Md. : 1950), 206, 2489 - 2497

HLA binding of self-peptides is biased towards proteins with specific molecular functions

Karnaukhov V. et al, (2021)

Reply.

Powell Doherty RD. et al, (2021), Gastroenterology, 160, 471 - 472

Identification of antigens presented by MHC for vaccines against tuberculosis

Bettencourt P. et al, (2020), npj Vaccines, 5

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire.

Nicastri A. et al, (2020), Proteomics, 20

Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers.

Saini SK. et al, (2020), Nature communications, 11

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire (vol 20, 1900401, 2020)

Nicastri A. et al, (2020), PROTEOMICS

Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells

Parker R. et al, (2020)

Extended Analysis Identifies Drug-Specific Association of 2 Distinct HLA Class II Haplotypes for Development of Immunogenicity to Adalimumab and Infliximab

Powell Doherty RD. et al, (2020), Gastroenterology, 159, 784 - 787

In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies.

Pandey K. et al, (2020), Molecular immunology, 123, 7 - 17

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire.

Nicastri A. et al, (2020), Proteomics, 20

Identification of an Unconventional Subpeptidome Bound to the Behçet's Disease-associated HLA-B*51:01 that is Regulated by Endoplasmic Reticulum Aminopeptidase 1 (ERAP1).

Chen L. et al, (2020), Molecular & cellular proteomics : MCP, 19, 871 - 883

Contribution of proteasome-catalyzed peptide cis-splicing to viral targeting by CD8+ T cells in HIV-1 infection

Paes W. et al, (2019), Proceedings of the National Academy of Sciences, 116, 24748 - 24759

NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions.

Alvarez B. et al, (2019), Molecular & cellular proteomics : MCP, 18, 2459 - 2477

LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly.

Attig J. et al, (2019), Genome research, 29, 1578 - 1590

Identification of Immunodominant HIV-1 Epitopes Presented by HLA-C*12:02, a Protective Allele, Using an Immunopeptidomics Approach

Chikata T. et al, (2019), Journal of Virology, 93

Mass spectrometry-based identification of MHC-bound peptides for immunopeptidomics.

Purcell AW. et al, (2019), Nature protocols, 14, 1687 - 1707

Targeting Mutated Plus Germline Epitopes Confers Pre-clinical Efficacy of an Instantly Formulated Cancer Nano-Vaccine

Mohsen MO. et al, (2019), Frontiers in Immunology, 10

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