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Publications

Practical Methods to Permit the Analysis of Host Biomarkers in Resource-Limited Settings.

Chandna A. et al, (2022), The American journal of tropical medicine and hygiene

A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.

Ndlangisa KM. et al, (2022), Microbial genomics, 8

Facilitating safe discharge through predicting disease progression in moderate COVID-19: a prospective cohort study to develop and validate a clinical prediction model in resource-limited settings.

Chandna A. et al, (2022), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

World Health Organization (WHO) standard methods for pneumococcal carriage studies.

Turner P. et al, (2022), Clin Infect Dis

Pneumococcal within-host diversity during colonisation, transmission and treatment

Tonkin-Hill G. et al, (2022)

Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

Murray CJL. et al, (2022), The Lancet, 399, 629 - 655

Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae

Mallawaarachchi S. et al, (2022), NAR Genomics and Bioinformatics, 4

International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease

Gladstone RA. et al, (2022), Vaccine

The evolutionary history of Shigella flexneri serotype 6 in Asia

Mai S-NT. et al, (2021), Microbial Genomics, 7

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections

Vihta K-D. et al, (2021), Scientific Reports, 11

Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting

Mai TT. et al, (2021), BMC Bioinformatics, 22

Evolutionary histories and antimicrobial resistance in Shigella flexneri and Shigella sonnei in Southeast Asia

Chung The H. et al, (2021), Communications Biology, 4

Impact of delays to incubation and storage temperature on blood culture results: a multi-centre study

Ling CL. et al, (2021), BMC Infectious Diseases, 21

Antimicrobial use and resistance data in human and animal sectors in the Lao PDR: evidence to inform policy

Chansamouth V. et al, (2021), BMJ Global Health, 6, e007009 - e007009

Antimicrobial resistance detection in Southeast Asian hospitals is critically important from both patient and societal perspectives, but what is its cost?

Roberts T. et al, (2021), PLOS Global Public Health, 1, e0000018 - e0000018

Genome-wide association, prediction and heritability in bacteria

Mallawaarachchi S. et al, (2021)

Improving empiric antibiotic prescribing in pediatric bloodstream infections: a potential application of weighted-incidence syndromic combination antibiograms (WISCA)

Cook A. et al, (2021), Expert Review of Anti-infective Therapy, 1 - 12

The role of interspecies recombinations in the evolution of antibiotic resistant pneumococci.

D'Aeth JC. et al, (2021), eLife, 10

Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: An exploratory study across Cambodia, Kenya, and the UK

Auguet OT. et al, (2021), EClinicalMedicine, 36, 100910 - 100910

Surveillance strategies using routine microbiology for antimicrobial resistance in low- and middle-income countries

Lim C. et al, (2021), Clinical Microbiology and Infection

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