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Publications

A Clinically Oriented antimicrobial Resistance surveillance Network (ACORN): pilot implementation in three countries in Southeast Asia, 2019-2020

van Doorn HR. et al, (2022), Wellcome Open Research, 7, 309 - 309

Impact of delayed processing of positive blood cultures on organism detection: a prospective multi-centre study

Roberts T. et al, (2022), BMC Infectious Diseases, 22

The CINAMR (Clinical Information Network-Antimicrobial Resistance) Project: A pilot microbial surveillance using hospitals linked to regional laboratories in Kenya: Study Protocol

Akech S. et al, (2022), Wellcome Open Research, 7, 256 - 256

Pneumococcal within-host diversity during colonization, transmission and treatment.

Tonkin-Hill G. et al, (2022), Nat Microbiol

Evaluation of trends in hospital antimicrobial use in the Lao PDR using repeated point-prevalence surveys-evidence to improve treatment guideline use.

Chansamouth V. et al, (2022), The Lancet regional health. Western Pacific, 27

Host Biomarkers Reflect Prognosis in Patients Presenting With Moderate Coronavirus Disease 2019: A Prospective Cohort Study.

Chandna A. et al, (2022), Open forum infectious diseases, 9

Antimicrobial resistance patterns in bacteria causing febrile illness in Africa, South Asia, and Southeast Asia: a systematic review of published etiological studies from 1980-2015

Roberts T. et al, (2022), International Journal of Infectious Diseases, 122, 612 - 621

Apramycin susceptibility of multidrug-resistant Gram-negative blood culture isolates in five countries in South-East Asia.

Gysin M. et al, (2022), International journal of antimicrobial agents

Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.

Lo SW. et al, (2022), The Lancet. Microbe

Pneumococcal genetic variability in age-dependent bacterial carriage.

Kremer PHC. et al, (2022), eLife, 11

Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13.

Belman S. et al, (2022), Microbial genomics, 8

Practical Methods to Permit the Analysis of Host Biomarkers in Resource-Limited Settings.

Chandna A. et al, (2022), The American journal of tropical medicine and hygiene

A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.

Ndlangisa KM. et al, (2022), Microbial genomics, 8

Facilitating safe discharge through predicting disease progression in moderate COVID-19: a prospective cohort study to develop and validate a clinical prediction model in resource-limited settings.

Chandna A. et al, (2022), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

World Health Organization (WHO) standard methods for pneumococcal carriage studies.

Turner P. et al, (2022), Clin Infect Dis

Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

Murray CJL. et al, (2022), The Lancet, 399, 629 - 655

Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae

Mallawaarachchi S. et al, (2022), NAR Genomics and Bioinformatics, 4

International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease

Gladstone RA. et al, (2022), Vaccine

The evolutionary history of Shigella flexneri serotype 6 in Asia

Mai S-NT. et al, (2021), Microbial Genomics, 7

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections

Vihta K-D. et al, (2021), Scientific Reports, 11

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