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Publications

Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration

Berger DJ. et al, (2021), Nature Communications, 12

Contact tracing is an imperfect tool for controlling COVID-19 transmission and relies on population adherence

Davis EL. et al, (2021), Nature Communications, 12

Dynamics of SARS-CoV-2 with waning immunity in the UK population

Crellen T. et al, (2021), Philosophical Transactions of the Royal Society B: Biological Sciences, 376

Engagement and adherence trade-offs for SARS-CoV-2 contact tracing

Lucas TCD. et al, (2021), Philosophical Transactions of the Royal Society B: Biological Sciences, 376

Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients

León-Sampedro R. et al, (2021), Nature Microbiology, 6, 606 - 616

Towards Evidence-based Control of Opisthorchis viverrini

Crellen T. et al, (2021), Trends in Parasitology, 37, 370 - 380

Dynamics of SARS-CoV-2 with Waning Immunity in the UK Population

Crellen T. et al, (2020)

Dissemination routes of the carbapenem resistance plasmid pOXA-48 in a hospital setting

León-Sampedro R. et al, (2020)

Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country

Crellen T. et al, (2019), eLife, 8

What drives mortality among HIV patients in a conflict setting? A prospective cohort study in the Central African Republic

Crellen T. et al, (2019), Conflict and Health, 13

Seasonal upsurge of pneumococcal meningitis in the Central African Republic

Crellen T. et al, (2019)

Seasonal upsurge of pneumococcal meningitis in the Central African Republic

Crellen T. et al, (2019), Wellcome Open Research, 3, 134 - 134

Evaluation of DNA Extraction Methods on Individual Helminth Egg and Larval Stages for Whole-Genome Sequencing.

Doyle SR. et al, (2019), Frontiers in genetics, 10

Seasonal upsurge of pneumococcal meningitis in the Central African Republic

Crellen T. et al, (2018), Wellcome Open Research, 3, 134 - 134

Transmission dynamics and between-species interactions of multidrug-resistant Enterobacteriaceae

Crellen T. et al, (2018)

What drives mortality among HIV patients in a conflict setting? A prospective cohort study in the Central African Republic

Crellen T. et al, (2018)

epicontacts: Handling, visualisation and analysis of epidemiological contacts

Nagraj VP. et al, (2018), F1000Research, 7, 566 - 566

Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria

Otto TD. et al, (2018), Nature Microbiology, 3, 687 - 697

epicontacts: Handling, visualisation and analysis of epidemiological contacts.

Nagraj VP. et al, (2018), F1000Research, 7

Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection

Crellen T. et al, (2016), Scientific Reports, 6

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