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Publications

Identification of neoantigens in esophageal adenocarcinoma

Nicholas B. et al, (2022)

Surveying Structural Complexity in Quantum Many-Body Systems

Suen WY. et al, (2022), Journal of Statistical Physics, 187

Quantum Adaptive Agents with Efficient Long-Term Memories

Elliott TJ. et al, (2022), Physical Review X, 12

Immunopeptidomic analysis of influenza A virus infected human tissues identifies internal proteins as a rich source of HLA ligands.

Nicholas B. et al, (2022), PLoS pathogens, 18

Immunopeptidomic analysis of influenza A virus infected human tissues identifies internal proteins as a rich source of HLA ligands

Nicholas B. et al, (2021)

Quantum Coarse Graining for Extreme Dimension Reduction in Modeling Stochastic Temporal Dynamics

Elliott TJ., (2021), PRX Quantum, 2

The immunopeptidomes of two transmissible cancers and their host have a common, dominant peptide motif.

Gastaldello A. et al, (2021), Immunology, 163, 169 - 184

The role of MHC I protein dynamics in tapasin and TAPBPR-assisted immunopeptidome editing

van Hateren A. and Elliott T., (2021), Current Opinion in Immunology, 70, 138 - 143

Fluctuations in TCR and pMHC interactions regulate T cell activation

Egan JR. et al, (2021)

Characterization of the Class I MHC Peptidome Resulting From DNCB Exposure of HaCaT Cells.

Bailey A. et al, (2021), Toxicological sciences : an official journal of the Society of Toxicology, 180, 136 - 147

Kinetics of Abacavir-Induced Remodelling of the Major Histocompatibility Complex Class I Peptide Repertoire.

Illing PT. et al, (2021), Frontiers in immunology, 12

HLA tapasin independence: broader peptide repertoire and HIV control.

Bashirova AA. et al, (2020), Proceedings of the National Academy of Sciences of the United States of America, 117, 28232 - 28238

Time-resolved microwell cell-pairing array reveals multiple T cell activation profiles.

Desalvo A. et al, (2020), Lab on a chip, 20, 3772 - 3783

Human leukocyte antigen (HLA) class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope.

MacLachlan BJ. et al, (2019), The Journal of biological chemistry, 294, 20246 - 20258

HPV Epitope Processing Differences Correlate with ERAP1 Allotype and Extent of CD8+ T-cell Tumor Infiltration in OPSCC.

Reeves E. et al, (2019), Cancer immunology research, 7, 1202 - 1213

A commentary on the Nobel Prize award for Physiology or Medicine - for the discovery of cancer therapy by inhibition of negative immune regulation

Hill SL. et al, (2019), Biochemist, 41, 4 - 7

Dynamically Driven Allostery in MHC Proteins: Peptide-Dependent Tuning of Class I MHC Global Flexibility.

Ayres CM. et al, (2019), Frontiers in immunology, 10

Malaria systems immunology: Plasmodium vivax induces tolerance during primary infection through dysregulation of neutrophils and dendritic cells.

Vallejo AF. et al, (2018), The Journal of infection, 77, 440 - 447

Patients with Chronic Obstructive Pulmonary Disease harbour a variation of Haemophilus species.

Osman KL. et al, (2018), Scientific reports, 8

The newly-arisen Devil facial tumour disease 2 (DFT2) reveals a mechanism for the emergence of a contagious cancer.

Caldwell A. et al, (2018), eLife, 7

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