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Publications

A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage

AbuOun M. et al, (2021), Microbial Genomics, 7

Epidemiology of Mycobacterium abscessus in England: an observational study

Lipworth S. et al, (2021), The Lancet Microbe, 2, e498 - e507

Quantitative SARS-CoV-2 anti-spike responses to Pfizer–BioNTech and Oxford–AstraZeneca vaccines by previous infection status

Eyre DW. et al, (2021), Clinical Microbiology and Infection, 27, 1516.e7 - 1516.e14

Antibody responses to SARS-CoV-2 vaccines in 45,965 adults from the general population of the United Kingdom

Wei J. et al, (2021), Nature Microbiology, 6, 1140 - 1149

Genomic network analysis of environmental and livestock F-type plasmid populations

Matlock W. et al, (2021), The ISME Journal, 15, 2322 - 2335

Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom

Pritchard E. et al, (2021), Nature Medicine, 27, 1370 - 1378

Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time

Walker AS. et al, (2021), eLife, 10

Risk Factors Associated with Carbapenemase-Producing Enterobacterales (CPE) Positivity in the Hospital Wastewater Environment

Park SC. et al, (2020), Applied and Environmental Microbiology, 86

Awareness of Appropriate Antibiotic Use in Primary Care for Influenza-Like Illness: Evidence of Improvement from UK Population-Based Surveys

Pouwels KB. et al, (2020), Antibiotics, 9, 690 - 690

Within-host genomics of SARS-CoV-2

Lythgoe KA. et al, (2020)

Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital

Kizny Gordon A. et al, (2020), Journal of Antimicrobial Chemotherapy, 75, 873 - 882

Risk factors for Klebsiella pneumoniae carbapenemase (KPC) gene acquisition and clinical outcomes across multiple bacterial species

Mathers AJ. et al, (2020), Journal of Hospital Infection, 104, 456 - 468

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies

Lipworth S. et al, (2020)

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Bush SJ. et al, (2020), GigaScience, 9

Hash-Based Core Genome Multilocus Sequence Typing for Clostridium difficile

Eyre DW. et al, (2019), Journal of Clinical Microbiology, 58

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

Lewandowski K. et al, (2019), Journal of Clinical Microbiology, 58

‘Caveat emptor’: the cautionary tale of endocarditis and the potential pitfalls of clinical coding data—an electronic health records study

Fawcett N. et al, (2019), BMC Medicine, 17

Antibiotic Review Kit for Hospitals (ARK-Hospital): study protocol for a stepped-wedge cluster-randomised controlled trial

Walker AS. et al, (2019), Trials, 20

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

van Aartsen JJ. et al, (2019), BMC Microbiology, 19

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Gweon HS. et al, (2019), Environmental Microbiome, 14

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