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Publications

BashTheBug: a crowd of volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates.

Fowler PW. et al, (2021)

An observational cohort study on the incidence of SARS-CoV-2 infection and B.1.1.7 variant infection in healthcare workers by antibody and vaccination status.

Lumley SF. et al, (2021), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

Quantitative SARS-CoV-2 anti-spike responses to Pfizer-BioNTech and Oxford-AstraZeneca vaccines by previous infection status.

Eyre DW. et al, (2021), Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

Clinical and public health utility of Mycobacterium tuberculosis whole genome sequencing.

Kizny Gordon A. et al, (2021), International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases

Stringent thresholds in SARS-CoV-2 IgG assays lead to under-detection of mild infections.

Eyre DW. et al, (2021), BMC infectious diseases, 21

Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers

Lumley SF. et al, (2021), New England Journal of Medicine, 384, 533 - 540

The Duration, Dynamics, and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antibody Responses in Individual Healthcare Workers

Lumley SF. et al, (2021), Clinical Infectious Diseases

Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

Merker M. et al, (2020), Genome Medicine, 12

Case Report: Disseminated, rifampicin resistant Mycobacterium bovis (BCG) infection in an immunocompromised child

Drysdale SB. et al, (2020), Wellcome Open Research, 5, 242 - 242

Case Report: Disseminated, rifampicin resistant Mycobacterium bovis (BCG) infection in an immunocompromised child

Drysdale S. et al, (2020)

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

Eyre DW. et al, (2020), eLife, 9

GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes

Wilson DJ. et al, (2020), Molecular Biology and Evolution, 37, 2450 - 2460

Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking

Kouchaki S. et al, (2020), Frontiers in Microbiology, 11

Sources of Multidrug Resistance in Patients With Previous Isoniazid-Resistant Tuberculosis Identified Using Whole Genome Sequencing: A Longitudinal Cohort Study

Vijay S. et al, (2020), Clinical Infectious Diseases

Elucidation of drug resistance mutations in Mycobacterium tuberculosis isolates from North India by whole-genome sequencing.

Sethi S. et al, (2020), Journal of global antimicrobial resistance, 20, 11 - 15

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

Hunt M. et al, (2019), Wellcome Open Research, 4, 191 - 191

Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases.

Jajou R. et al, (2019), Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 24

Building the Framework for Standardized Clinical Laboratory Reporting of Next-generation Sequencing Data for Resistance-associated Mutations in Mycobacterium tuberculosis Complex.

Tornheim JA. et al, (2019), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 69, 1631 - 1633

Cross-sectional study of the prevalence, causes and management of hospital-onset diarrhoea

Mawer D. et al, (2019), Journal of Hospital Infection, 103, 200 - 209

Individualising therapy for drug-sensitive tuberculosis.

Esmail H. et al, (2019), The Lancet. Respiratory medicine, 7, 834 - 835

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