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Publications

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

Votintseva AA. et al, (2017), Journal of Clinical Microbiology, 55, 1285 - 1298

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

Dolle DD. et al, (2017), Genome Research, 27, 300 - 309

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

Eberle MA. et al, (2017), Genome Research, 27, 157 - 164

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples

Votintseva AA. et al, (2016)

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

Dilthey AT. et al, (2016), PLOS Computational Biology, 12, e1005151 - e1005151

Correction: Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Bradley P. et al, (2016), Nature Communications, 7

Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum

Miles A. et al, (2016), Genome Research, 26, 1288 - 1299

Binding of Plasmodium falciparum Merozoite Surface Proteins DBLMSP and DBLMSP2 to Human Immunoglobulin M Is Conserved among Broadly Diverged Sequence Variants

Crosnier C. et al, (2016), Journal of Biological Chemistry, 291, 14285 - 14299

Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data

O’Brien JD. et al, (2016), PLOS Computational Biology, 12, e1004824 - e1004824

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

Earle SG. et al, (2016), Nature Microbiology, 1

Comprehensive genome-wide evaluation of lapatinib-induced liver injury yields a single genetic signal centered on known risk allele HLA-DRB1*07:01

Parham LR. et al, (2016), The Pharmacogenomics Journal, 16, 180 - 185

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Bradley P. et al, (2015), Nature Communications, 6

A global reference for human genetic variation

Auton A. et al, (2015), Nature, 526, 68 - 74

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

Walker TM. et al, (2015), The Lancet Infectious Diseases, 15, 1193 - 1202

Improved genome inference in the MHC using a population reference graph

Dilthey A. et al, (2015), Nature Genetics, 47, 682 - 688

Improved genome inference in the MHC using a population reference graph

Dilthey A. et al, (2015), Nature Genetics, 47, 682 - 688

The genomic and phenotypic diversity of Schizosaccharomyces pombe

Jeffares DC. et al, (2015), Nature Genetics, 47, 235 - 241

Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications

Rimmer A. et al, (2014), Nature Genetics, 46, 912 - 918

Rapid Whole-Genome Sequencing for Surveillance ofSalmonella entericaSerovar Enteritidis

den Bakker HC. et al, (2014), Emerging Infectious Diseases, 20, 1306 - 1314

A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data

O’Brien JD. et al, (2014), Genetics, 197, 925 - 937

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