Contact information
Research groups
Francesco Boccellato
Leadership Fellow
There is strong evidence that some infections represent a major risk factor for the development of cancer, but how pathogens initiate this disease is still unknown and has been the focus of my research since I was a student. During my PhD at the University of Rome (Italy), I studied the Epstein Barr Virus, a herpesvirus associated with many types of blood cancers and carcinomas. In contrast to viruses, bacteria do not transfer genetic information into the nucleus of the host cell and so it remains unclear why bacterial infections are also associated with cancer. Chronic infection with Helicobacter pylori for example, is the cause of most stomach cancer cases. Investigating the direct and indirect effects of carcinogenic pathogens on the host cells tissue is therefore crucial for understanding how cancer begins.
Carcinogenic pathogens can colonise the human body for years, they can change the shape and the cellular content of tissues and they can break the DNA of infected cells, increasing the chances of cellular transformation. To study how pathogens cause cancer we use human derived stem cell-driven culture models and in particular we have invented and patented a primary culture system called “mucosoid cultures”. During my post-doc at the Max Planck Institute for Infection Biology in Berlin (Germany), I generated a model of healthy epithelial cells which faithfully reproduces in vitro most of the features of the epithelium in vivo. The most evident feature of this reconstructed human epithelial layer is the mucus production and its formidable defence capacity against infection. However, some bacteria are able to evade this defensive system and can establish colonies in tissue niches where they can hide from the immune detection for years.
At the Ludwig Institute for Cancer Research, we are using our mucosoid culture models to study the signals of the tissue microenvironment governing cell regeneration and differentiation as well as the impact of infection on human tissue and the genomes of infected cells. We are actively involved in the development and in the dissemination of human stem cell-related culture technologies because we think that beyond the obvious translational impact, understanding human tissue is a great challenge in biology.
Online seminars
Key publications
Inflammation promotes stomach epithelial defense by stimulating the secretion of antimicrobial peptides in the mucus
Journal article
Vllahu M. et al, (2024), Gut Microbes, 16
DNA methylation in human gastric epithelial cells defines regional identity without restricting lineage plasticity
Journal article
Fritsche K. et al, (2022), Clinical Epigenetics, 14
Morphogen Signals Shaping the Gastric Glands in Health and Disease
Journal article
Zagami C. et al, (2022), International Journal of Molecular Sciences, 23, 3632 - 3632
EGF and BMPs Govern Differentiation and Patterning in Human Gastric Glands
Journal article
Wölffling S. et al, (2021), Gastroenterology, 161, 623 - 636.e16
Molecular modelling of the gastric barrier response, from infection to carcinogenesis
Journal article
Traulsen J. et al, (2021), Best Practice & Research Clinical Gastroenterology, 50-51, 101737 - 101737
Genomic aberrations after short-term exposure to colibactin-producing E. coli transform primary colon epithelial cells
Journal article
Iftekhar A. et al, (2021), Nature Communications, 12
Genotoxic Effect of Salmonella Paratyphi A Infection on Human Primary Gallbladder Cells
Journal article
Sepe LP. et al, (2020), mBio, 11
Polarised epithelial monolayers of the gastric mucosa reveal insights into mucosal homeostasis and defence against infection
Journal article
Boccellato F. et al, (2019), Gut, 68, 400 - 413
Helicobacter pylori Depletes Cholesterol in Gastric Glands to Prevent Interferon Gamma Signaling and Escape the Inflammatory Response
Journal article
Morey P. et al, (2018), Gastroenterology, 154, 1391 - 1404.e9
Bacteria Moving into Focus of Human Cancer
Journal article
Boccellato F. and Meyer TF., (2015), Cell Host & Microbe, 17, 728 - 730
Recent publications
Organoids and derived models to study the microenvironments of bacterial infections
Journal article
Lyon K. et al, (2025), Current Opinion in Biomedical Engineering, 35, 100595 - 100595
Long-term memory in epithelia: transient IFNγ exposure drives stable repression of TFF1 in gastric epithelial cells via epigenetic changes.
Journal article
Voli A. et al, (2025), Frontiers in immunology, 16
Inflammation promotes stomach epithelial defense by stimulating the secretion of antimicrobial peptides in the mucus
Journal article
Vllahu M. et al, (2024), Gut Microbes, 16
HtrA-Dependent E-Cadherin Shedding Impairs the Epithelial Barrier Function in Primary Gastric Epithelial Cells and Gastric Organoids
Journal article
Canadas-Ortega M. et al, (2024), International Journal of Molecular Sciences, 25, 7083 - 7083
Revealing the pathogenesis of gastric intestinal metaplasia based on the mucosoid air-liquid interface
Journal article
Liu S. et al, (2024), Journal of Translational Medicine, 22
DNA methylation in human gastric epithelial cells defines regional identity without restricting lineage plasticity
Journal article
Fritsche K. et al, (2022), Clinical Epigenetics, 14
IFNγ-dependent silencing of TFF1 during Helicobacter pylori infection
Journal article
Eletto D. et al, (2022), Open Biology, 12
Human gastric fibroblasts ameliorate A20-dependent cell survival in co-cultured gastric epithelial cells infected by Helicobacter pylori
Journal article
Jantaree P. et al, (2022), Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1869, 119364 - 119364
Morphogen Signals Shaping the Gastric Glands in Health and Disease
Journal article
Zagami C. et al, (2022), International Journal of Molecular Sciences, 23, 3632 - 3632
Helicobacter pylori-induced NF-κB: trailblazer for gastric pathophysiology
Journal article
Maubach G. et al, (2022), Trends in Molecular Medicine, 28, 210 - 222
EGF and BMPs Govern Differentiation and Patterning in Human Gastric Glands
Journal article
Wölffling S. et al, (2021), Gastroenterology, 161, 623 - 636.e16
Molecular modelling of the gastric barrier response, from infection to carcinogenesis
Journal article
Traulsen J. et al, (2021), Best Practice & Research Clinical Gastroenterology, 50-51, 101737 - 101737
Genomic aberrations after short-term exposure to colibactin-producing E. coli transform primary colon epithelial cells
Journal article
Iftekhar A. et al, (2021), Nature Communications, 12
Genotoxic Effect of Salmonella Paratyphi A Infection on Human Primary Gallbladder Cells
Journal article
Sepe LP. et al, (2020), mBio, 11
Helicobacter pylori-controlled c-Abl localization promotes cell migration and limits apoptosis
Journal article
Posselt G. et al, (2019), Cell Communication and Signaling, 17
Polarised epithelial monolayers of the gastric mucosa reveal insights into mucosal homeostasis and defence against infection
Journal article
Boccellato F. et al, (2019), Gut, 68, 400 - 413
Helicobacter pylori Depletes Cholesterol in Gastric Glands to Prevent Interferon Gamma Signaling and Escape the Inflammatory Response
Journal article
Morey P. et al, (2018), Gastroenterology, 154, 1391 - 1404.e9
The gastric "mucosoid cultures": a new model to investigate Helicobacter pylori infection and host response
Conference paper
Boccellato F. et al, (2018), HELICOBACTER, 23
ntiphospholipid antibodies detected by line immunoassay differentiate among patients with antiphospholipid syndrome, with infections and asymptomatic carriers
Journal article
Roggenbuck D. et al, (2016), Arthritis Research & Therapy, 18
Bacteria Moving into Focus of Human Cancer
Journal article
Boccellato F. and Meyer TF., (2015), Cell Host & Microbe, 17, 728 - 730
ESTABLISHMENT OF AN IN VITRO INFECTION MODEL OF H-PYLORI USING HUMAN PRIMARY GASTRIC EPITHELIAL CELLS
Conference paper
Boccellato F. et al, (2014), HELICOBACTER, 19, 96 - 96
Differential regulation of miR-21 and miR-146a by Epstein–Barr virus-encoded EBNA2
Journal article
Rosato P. et al, (2012), Leukemia, 26, 2343 - 2352
Epstein–Barr virus encoded LMP1 downregulates TCL1 oncogene through miR-29b
Journal article
Anastasiadou E. et al, (2010), Oncogene, 29, 1316 - 1328
Epstein–Barr virus infection leads to partial phenotypic reversion of terminally differentiated malignant B cells
Journal article
Anastasiadou E. et al, (2009), Cancer Letters, 284, 165 - 174
EBNA2 Interferes with the Germinal Center Phenotype by Downregulating BCL6 and TCL1 in Non-Hodgkin's Lymphoma Cells
Journal article
Boccellato F. et al, (2007), Journal of Virology, 81, 2274 - 2282
Epigenetic mechanisms do not control viral latency III in primary effusion lymphoma cells infected with a recombinant Epstein–Barr virus
Journal article
Anastasiadou E. et al, (2005), Leukemia, 19, 1854 - 1856